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- ARS Genome
Database Resource (Cornell)
- ARS Genome Database Resource is primarily a site for communication
of Plant Genome data among scientists worldwide. The medium is a set
of genome databases, similar to the ones for Human genome mapping and
sequencing. They include data about plant genes, chromosome maps, DNA
fingerprints, beneficial traits, and crop varieties that possess those
traits.
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- CottonDB
- A resource on the developing knowledge base of Cotton Genetics.
- Dendrome,
US TreeGenes
- Dendrome is a collection of forest tree genome databases and other
forest genetic information resources for the international forest genetics
community
- KOMUGI
(Japan)
- GrainGenes,
a genome database for Triticeae and related species. RiceGenes
a genome database for rice.
- MaizeDB,
US MaizeDB Database
- A public Internet gateway to current knowledge about the maize genome
and its expression.
- Mendel Bioinformatics
Group, UK
- Mendel-ESTS,
contains all of the plant EST and STS sequences currently in dbEST and
dbSTS (>94,000) related to the sequences, grouped by gene family,
in the Gene Family Database.
Mendel-GFDbDatabase of Genes Organized by Families. Now with
Pfam, Prosite & TRANSFAC domain information
- Plant
Chromatin Database
- Database for chromatin proteins in plants, including functions and
molecular phylogenetic relationships, with initial emphasis on Arabidopsis
and maize
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- RiceGAAS:
Rice Genome Annotation Database
- A rice genome automated annotation system; integrates programs for
prediction and analysis of protein-coding gene structure.
SIU-C Soy
Phytoestrogen Gene Mapping
- Stanford Genomic
Resources USA
- SGD
(Saccharomyces), scientific database of the molecular
biology and genetics of the yeast Saccharomyces cerevisiae(baker's or
budding yeast).
Mendel-CPGN: developinging a common nomenclature for sequenced
plant genes
- SolGenes
-- Genome Database for the Solanaceae
- A U.S.D.A.-funded Genome Database for the Solanaceae, containing information
about potatoes, tomatoes, peppers, and related species.
- ZmDB
Maize Genome Database
- Goals include discovering maize genes using EST sequencing and engineered
Mu (RescueMu) tagging, and developing new tools to facilitate gene mapping
and phenotypic analysis.
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- ARCHAIC
: ARCHAeobacterial Information Collection
- The aim of ARCHAIC is to analyze archaebacterial genomic DNA sequences
in order to understand the overall organization of these genomes and
in order to permit comparison of different species on the basis of their
genomic DNA sequences.
DNA Data Bank of Japan- DDBJ is the sole DNA data bank in Japan, which is officially certified
to collect DNA sequences from researchers and to issue the internationally
recognized accession number to data submitters.
ExPASy Molecular Biology
Server- The ExPASy (Expert Protein Analysis System) proteomics server of the
Swiss Institute of Bioinformatics (SIB) is dedicated to the analysis
of protein sequences and structures as well as 2-D PAGE.
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European Bioinformatics
Institute
- The European Bioinformatics Institute (EBI) is a centre for research
and services in bioinformatics. The Institute manages databases of biological
data including nucleic acid, protein sequences and macromolecular structures.
- Genbank
- This site allows you to search and download registered gene sequences,
with information on the gene's function, and the organism in which it
was found.
- Genome Database
of the Human Genome Project
- GDB's mission is to make available to scientists an encyclopedia of
the human genome that is being constantly revised and updated to reflect
the current state of scientific knowledge.
National Center
for Biotechnology Information / GenBank- NCBI creates public databases, conducts research in computational
biology, develops software tools for analyzing genome data, and disseminates
biomedical information.
National Center for
Genome Resources- The National Center for Genome Resources links scientists to innovative
solutions in bioinformatics — through collaborations, data management,
and
creative software development.
Pfam Protein
Domain Database- Pfam is a large collection of multiple sequence alignments and hidden
Markov models covering many common protein domains.
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- Sanger
Centre Databases, UK
- The Sanger Institute provides its own computing resources and database
storage for public access by the scientific community.
National Center
for Genome Resources , - USA The National Center for Genome Resources links scientists to innovative
solutions in bioinformatics — through collaborations, data management,
and
creative software development.
Danish Server for Biology/Genome
Science
The Johns Hopkins University
BioInformatics Web Server - an encyclopedia of the human genome that is being constantly revised
and updated to reflect the current state of scientific knowledge. Historically
focussed on gene mapping but is moving from mapping to sequence to functional
analysis.
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